FIMM

P.O. Box 20
FI-00014
University of Helsinki
Finland

Contacts

2012 © Institute for Molecular Medicine Finland FIMM

SAIL-SIMBIOMS Workshop

Wednesday 24. November 08:45 - Wednesday 24. November 2010 17:00
Location: Helsinki, Biomedicum

Implementation and usage of biobank online inventories, collaborative data availability portals and national BBMRI portals

 

Presentations and other informtion about SAIL-SIMBIOMS workshop in Helsinki.

 

Register here (event is meant only for SAIL-SIMBIOMS developers)

Organizer: Juha Muilu, juha.muilu@helsinki.fi

Agenda

8:45 Wake-up coffee
9:00 Session I : Development
  • Overview of the architecture (Julio Fernandez Banet, EBI, 10 min)
  • Data access management (Joern Dietrich, EBI, 10 min)
  • Scalability and performance (Teemu Perheentupa, FIMM, 10 min)
Discussion on system requirements and future plans (see the table)
11:00
 Coffee break
11:15 Session I (continues)

Discussion continues

  • Quick intro to GIT (Teemu Perheentupa, FIMM 5min)
  • Code management (Russell Vincent, Sanger Institute, 5 min)
12:00
 Lunch
13:00 Session II : User and data manager perspective
Presentation of data management workflows for specific projects: (10 min + 5 min questions)
  • Meilahti campus Biobank data in SAIL (Juha Muilu, FIMM)
  • HUNT data in SAIL (Jon Heggland, NTNU)
  • SUMMIT harmonisation (Joern Dietrich, EBI)
  • 2 examples of SAIL-based harmonization (Sandra Ose, IMCS)
14:30
 Coffee break
15:00 - 17:00 Session II (continues)
  • Finrisk07 and NFBC66 - End users perspectives (Markus Perola, FIMM/THL)
  • Harmonisation at HUNT (Arnulf Langhammer, NTNU)
Discussion on GUI and functionality expectations
19:00 Dinner

Back to the archive.