2012 © Institute for Molecular Medicine Finland FIMM
Evaluate Results
SeqScannerView.gifIt is recommended to review the quality of your sequencing chromatograms before you use the sequences.
Some sequence chromatogram viewers and analysis software is listed in "Software Links" section.
SequenceScanner v1.0 (Applied Biosystems) enables you to quickly view, edit, print and export sequence data generated using the Applied Biosystems Genetic Analyzers. The software helps you to:
- Review all traces in thumbnail format and sort them by trace quality.
- View simultaneously the analyzed and raw trace data for a single trace.
- Spot sample failures readily with reports such as the Plate Report.
- Export traces into commonly used presentation formats (.jpeg, pdf).
Free Sequence Scanner v1.0 download.
SequenceScanner quick help:
- Download and install SequenceScanner
- Start SequenceScanner
- Select "File - Import traces"
- Select the folder containing chromatograms - click "OK"
- All chromatograms within the selected folder are opened
- For example select "View - Thumbnails" to see miniature raw data profiles
- Double-click on any sequence - a chromatogram window opens
- Select "View - Reports" from the menus - Reports section opens.
- Browse through reports - print or export to Excel if needed.
- For example "Plate report" gives you quick overview of the location of your samples on the plate and how well reactions succeeded.
- See ABI product bulletin for Sequence Scanner
Some screenshots from SequenceScanner:
View sequencing chromatograms: SeqScannerView.gif
View sequence raw data profiles: SeqScannerView.gif
View plate reports: SeqScannerPlateRep.gif
View read length report: SeqScannerCRL.gif
View & export QC report: SeqScannerQC.gif
