Life beyond the pixels: image analysis and machine learning methods for single-cell analysis

Monday, November 5, 2018 - 12:00

Location

 

BIOMEDICUM HELSINKI SEMINAR 5.11.2018

Life beyond the pixels: image analysis and machine learning methods for single-cell analysis

Place: Biomedicum Helsinki 1, Lecture Hall 1

 

Speaker:

Peter Horvath, FiDiPro Fellow, FIMM, University of Helsinki

Director, Institute of Biochemistry, Hungarian Academy of Sciences, Szeged

More information about the speaker:

Group at FIMM
Group at the Institute of Biochemistry, Hungary

 

Host: Johan Lundin 

Student host: Dmitrii Bychkov

 

Relevant references:

Brasko C., Smith K., Molnar, Cs., Farago N., Hegedus L., Balind A., Balassa, T., Szkalisity, A., Sukosd F., Kocsis K., Balint B., Paavolainen, L., Enyedi M.Z., Nagy I., Puskas L.G., Haracska L., Tamas, G., Horvath, P. (2018). Intelligent image-based in situ single-cell isolation. Nature Communications

Smith K., Li Y., Piccinini, F., Csucs G., Balazs C., Bevilacqua A., Horvath, P. (2015). CIDRE: an illumination-correction method for optical microscopy. Nature Methods

Piccinini, F., Balassa, T., Szkalisity, A., Molnar, Cs., Paavolainen, L., Kujala, K., Buzas, K., Sarazova, M., Pietiainen, V., Kutay, U., Smith K., Horvath, P. (2017). ACC: Discovery software for phenotypic image analysis. Cell Systems

Smith K., Piccinini, F., Balassa, T., Koos, K., Danka, T., Azizpour H., Horvath, P. (2018). Phenotypic image analysis software tools for exploring and understanding big image data from cell-based assays. Cell Systems.

Caicedo, J. C., ..., Molnar, Cs., Paavolainen, L., ..., Horvath, P., Linington, R. G., Carpenter, A. E. (2017). Data-analysis strategies for image-based cell profiling. Nature Methods.

Horvath, P., Aulner, N., Bickle, M., Daves, A., Del Nery, E., Ebner, D., Montoya, M., Ostling, P., Pietiainen, V., Price, L., Shorte, S., Turcatti, G., von Schantz, C., Carragher, N. (2016). Screening out irrelevant cell-based models of disease. Nature Reviews Drug Discovery.

Last updated: 09.11.2018 - 14:32