Bioinformatics Services

Main bioinformatics services: 

RNASeq analysis

Contact person:  

Bioinformatician Matti Kankainen


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Single Cell Omics bioinformatics

SC OMICS bioinformatics provides single cell data analysis advice, training and guidelines nationally and internationally.

Contact person:  

Bioinformatician Bishwa Ghimire


Differential expression analysis of single cell expression data

User fees:

The research infrastructure is supported by University of Helsinki (HiLIFE) and Biocenter Finland.

User access policy:

Open access service where customer prioritization is done as first-come, first-serve basis.

User guidelines:

General single cell data analysis guidelines you can find here. Contact us to get further information.


In addition, we can assist in:

Identification of genetic variants
Identification on somatic mutations in tumors
Identification on putative disease causing variants from exomes/genomes
Identification and quantification of mutations in common tumor genes

Data Managing

Providing: data management for whole genome association, targeted, or linkage studies; tracking genotypic and phenotypic data in databases, with capabilities for managing phenotypes, family-structures, genotypes, samples, plates, SNP/STR, maps, output to analysis packages, and more. We manage all types of samples and associated data in customizable multi-level inventories that can be developed into laboratory workflows.

Last updated: 26.01.2018 - 13:51